Relphormer baseline

dataset/umls/get_neighbor/entity2id.txt

@@ -0,0 +1,135 @@
+idea_or_concept	0
+virus	1
+spatial_concept	2
+human_caused_phenomenon_or_process	3
+human	4
+organ_or_tissue_function	5
+daily_or_recreational_activity	6
+steroid	7
+biomedical_or_dental_material	8
+vertebrate	9
+immunologic_factor	10
+inorganic_chemical	11
+invertebrate	12
+embryonic_structure	13
+functional_concept	14
+amino_acid_peptide_or_protein	15
+fish	16
+reptile	17
+physical_object	18
+disease_or_syndrome	19
+biologically_active_substance	20
+physiologic_function	21
+population_group	22
+group	23
+body_space_or_junction	24
+bird	25
+qualitative_concept	26
+bacterium	27
+cell_function	28
+enzyme	29
+organophosphorus_compound	30
+nucleic_acid_nucleoside_or_nucleotide	31
+cell	32
+language	33
+antibiotic	34
+indicator_reagent_or_diagnostic_aid	35
+fungus	36
+chemical_viewed_functionally	37
+rickettsia_or_chlamydia	38
+patient_or_disabled_group	39
+professional_society	40
+health_care_related_organization	41
+clinical_attribute	42
+biomedical_occupation_or_discipline	43
+temporal_concept	44
+phenomenon_or_process	45
+family_group	46
+chemical_viewed_structurally	47
+regulation_or_law	48
+acquired_abnormality	49
+experimental_model_of_disease	50
+professional_or_occupational_group	51
+injury_or_poisoning	52
+receptor	53
+drug_delivery_device	54
+hazardous_or_poisonous_substance	55
+organism	56
+neoplastic_process	57
+mammal	58
+molecular_function	59
+lipid	60
+group_attribute	61
+nucleotide_sequence	62
+biologic_function	63
+chemical	64
+cell_component	65
+intellectual_product	66
+manufactured_object	67
+classification	68
+geographic_area	69
+vitamin	70
+gene_or_genome	71
+self_help_or_relief_organization	72
+pathologic_function	73
+amphibian	74
+laboratory_or_test_result	75
+organism_attribute	76
+cell_or_molecular_dysfunction	77
+therapeutic_or_preventive_procedure	78
+sign_or_symptom	79
+occupational_activity	80
+anatomical_abnormality	81
+hormone	82
+fully_formed_anatomical_structure	83
+educational_activity	84
+quantitative_concept	85
+tissue	86
+organism_function	87
+social_behavior	88
+mental_or_behavioral_dysfunction	89
+governmental_or_regulatory_activity	90
+molecular_biology_research_technique	91
+occupation_or_discipline	92
+conceptual_entity	93
+body_location_or_region	94
+pharmacologic_substance	95
+clinical_drug	96
+food	97
+substance	98
+genetic_function	99
+congenital_abnormality	100
+medical_device	101
+carbohydrate	102
+health_care_activity	103
+eicosanoid	104
+element_ion_or_isotope	105
+diagnostic_procedure	106
+entity	107
+event	108
+laboratory_procedure	109
+environmental_effect_of_humans	110
+body_part_organ_or_organ_component	111
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+mental_process	113
+research_device	114
+alga	115
+natural_phenomenon_or_process	116
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+animal	118
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+behavior	120
+carbohydrate_sequence	121
+archaeon	122
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+organization	124
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+organic_chemical	126
+finding	127
+age_group	128
+activity	129
+machine_activity	130
+plant	131
+body_substance	132
+amino_acid_sequence	133
+neuroreactive_substance_or_biogenic_amine	134

dataset/umls/get_neighbor/relation2id.txt

@@ -0,0 +1,46 @@
+measures	0
+derivative_of	1
+disrupts	2
+prevents	3
+conceptually_related_to	4
+manifestation_of	5
+diagnoses	6
+evaluation_of	7
+contains	8
+co-occurs_with	9
+conceptual_part_of	10
+performs	11
+degree_of	12
+interacts_with	13
+uses	14
+issue_in	15
+assesses_effect_of	16
+property_of	17
+precedes	18
+result_of	19
+causes	20
+practices	21
+ingredient_of	22
+analyzes	23
+surrounds	24
+indicates	25
+associated_with	26
+affects	27
+location_of	28
+produces	29
+process_of	30
+measurement_of	31
+connected_to	32
+carries_out	33
+method_of	34
+adjacent_to	35
+occurs_in	36
+consists_of	37
+interconnects	38
+manages	39
+complicates	40
+part_of	41
+treats	42
+isa	43
+developmental_form_of	44
+exhibits	45

dataset/umls/get_neighbor/test2id.txt

@@ -0,0 +1,661 @@
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dataset/umls/get_neighbor/valid2id.txt

@@ -0,0 +1,652 @@
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