try sep vit

main.py

@@ -20,6 +20,7 @@ from data_loader import TrainDataset, TestDataset
 from utils import get_logger, get_combined_results, set_gpu, prepare_env, set_seed
 
 from models import ComplEx, ConvE, HypER, InteractE, FouriER, TuckER
+import traceback
 
 
 class Main(object):
@@ -477,7 +478,11 @@ class Main(object):
                 batch, 'train')
 
             pred = self.model.forward(sub, rel, neg_ent, self.p.train_strategy)
-            loss = self.model.loss(pred, label, sub_samp)
+            try:
+                loss = self.model.loss(pred, label, sub_samp)
+            except Exception as e:
+                print(pred)
+                raise e
 
             loss.backward()
             self.optimizer.step()
@@ -715,16 +720,19 @@ if __name__ == "__main__":
         model.load_model(save_path)
         model.evaluate('test')
     else:
-        while True:
-            try:
-                model = Main(args, logger)
-                model.fit()
-            except Exception as e:
-                print(e)
-                try:
-                    del model
-                except Exception:
-                    pass
-                time.sleep(30)
-                continue
-            break
+        model = Main(args, logger)
+        model.fit()
+        # while True:
+        #     try:
+        #         model = Main(args, logger)
+        #         model.fit()
+        #     except Exception as e:
+        #         print(e)
+        #         traceback.print_exc()
+        #         try:
+        #             del model
+        #         except Exception:
+        #             pass
+        #         time.sleep(30)
+        #         continue
+        #     break

models.py

@@ -1,15 +1,16 @@
 import torch
-from torch import nn
+from torch import nn, einsum
 import torch.nn.functional as F
 import numpy as np
 from functools import partial
 from einops.layers.torch import Rearrange, Reduce
+from einops import rearrange, repeat
 from utils import *
 from layers import *
 from timm.data import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD
 from timm.models.layers import DropPath, trunc_normal_
 from timm.models.registry import register_model
-from timm.models.layers.helpers import to_2tuple
+from timm.layers.helpers import to_2tuple
 
 
 class ConvE(torch.nn.Module):
@@ -557,6 +558,8 @@ class FouriER(torch.nn.Module):
         z = self.forward_embeddings(y)
         z = self.forward_tokens(z)
         z = z.mean([-2, -1])
+        if np.count_nonzero(np.isnan(z)) > 0:
+            print("ZZZ")
         z = self.norm(z)
         x = self.head(z)
         x = self.hidden_drop(x)
@@ -707,6 +710,363 @@ def basic_blocks(dim, index, layers,
 
     return blocks
 
+def window_partition(x, window_size):
+    """
+    Args:
+        x: (B, H, W, C)
+        window_size (int): window size
+
+    Returns:
+        windows: (num_windows*B, window_size, window_size, C)
+    """
+    B, C, H, W = x.shape
+    x = x.view(B, H // window_size, window_size, W // window_size, window_size, C)
+    windows = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(-1, window_size, window_size, C)
+    return windows
+
+class WindowAttention(nn.Module):
+    r""" Window based multi-head self attention (W-MSA) module with relative position bias.
+    It supports both of shifted and non-shifted window.
+
+    Args:
+        dim (int): Number of input channels.
+        window_size (tuple[int]): The height and width of the window.
+        num_heads (int): Number of attention heads.
+        qkv_bias (bool, optional):  If True, add a learnable bias to query, key, value. Default: True
+        attn_drop (float, optional): Dropout ratio of attention weight. Default: 0.0
+        proj_drop (float, optional): Dropout ratio of output. Default: 0.0
+        pretrained_window_size (tuple[int]): The height and width of the window in pre-training.
+    """
+
+    def __init__(self, dim, window_size, num_heads, qkv_bias=True, attn_drop=0., proj_drop=0.,
+                 pretrained_window_size=[0, 0]):
+
+        super().__init__()
+        self.dim = dim
+        self.window_size = window_size  # Wh, Ww
+        self.pretrained_window_size = pretrained_window_size
+        self.num_heads = num_heads
+
+        self.logit_scale = nn.Parameter(torch.log(10 * torch.ones((num_heads, 1, 1))), requires_grad=True)
+
+        # mlp to generate continuous relative position bias
+        self.cpb_mlp = nn.Sequential(nn.Linear(2, 512, bias=True),
+                                     nn.ReLU(inplace=True),
+                                     nn.Linear(512, num_heads, bias=False))
+
+        # get relative_coords_table
+        relative_coords_h = torch.arange(-(self.window_size[0] - 1), self.window_size[0], dtype=torch.float32)
+        relative_coords_w = torch.arange(-(self.window_size[1] - 1), self.window_size[1], dtype=torch.float32)
+        relative_coords_table = torch.stack(
+            torch.meshgrid([relative_coords_h,
+                            relative_coords_w])).permute(1, 2, 0).contiguous().unsqueeze(0)  # 1, 2*Wh-1, 2*Ww-1, 2
+        if pretrained_window_size[0] > 0:
+            relative_coords_table[:, :, :, 0] /= (pretrained_window_size[0] - 1)
+            relative_coords_table[:, :, :, 1] /= (pretrained_window_size[1] - 1)
+        else:
+            relative_coords_table[:, :, :, 0] /= (self.window_size[0] - 1)
+            relative_coords_table[:, :, :, 1] /= (self.window_size[1] - 1)
+        relative_coords_table *= 8  # normalize to -8, 8
+        relative_coords_table = torch.sign(relative_coords_table) * torch.log2(
+            torch.abs(relative_coords_table) + 1.0) / np.log2(8)
+
+        self.register_buffer("relative_coords_table", relative_coords_table)
+
+        # get pair-wise relative position index for each token inside the window
+        coords_h = torch.arange(self.window_size[0])
+        coords_w = torch.arange(self.window_size[1])
+        coords = torch.stack(torch.meshgrid([coords_h, coords_w]))  # 2, Wh, Ww
+        coords_flatten = torch.flatten(coords, 1)  # 2, Wh*Ww
+        relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :]  # 2, Wh*Ww, Wh*Ww
+        relative_coords = relative_coords.permute(1, 2, 0).contiguous()  # Wh*Ww, Wh*Ww, 2
+        relative_coords[:, :, 0] += self.window_size[0] - 1  # shift to start from 0
+        relative_coords[:, :, 1] += self.window_size[1] - 1
+        relative_coords[:, :, 0] *= 2 * self.window_size[1] - 1
+        relative_position_index = relative_coords.sum(-1)  # Wh*Ww, Wh*Ww
+        self.register_buffer("relative_position_index", relative_position_index)
+
+        self.qkv = nn.Linear(dim, dim * 3, bias=False)
+        if qkv_bias:
+            self.q_bias = nn.Parameter(torch.zeros(dim))
+            self.v_bias = nn.Parameter(torch.zeros(dim))
+        else:
+            self.q_bias = None
+            self.v_bias = None
+        self.attn_drop = nn.Dropout(attn_drop)
+        self.proj = nn.Linear(dim, dim)
+        self.proj_drop = nn.Dropout(proj_drop)
+        self.softmax = nn.Softmax(dim=-1)
+
+    def forward(self, x, mask=None):
+        """
+        Args:
+            x: input features with shape of (num_windows*B, N, C)
+            mask: (0/-inf) mask with shape of (num_windows, Wh*Ww, Wh*Ww) or None
+        """
+        B_, N, C = x.shape
+        qkv_bias = None
+        if self.q_bias is not None:
+            qkv_bias = torch.cat((self.q_bias, torch.zeros_like(self.v_bias, requires_grad=False), self.v_bias))
+        qkv = F.linear(input=x, weight=self.qkv.weight, bias=qkv_bias)
+        qkv = qkv.reshape(B_, N, 3, self.num_heads, -1).permute(2, 0, 3, 1, 4)
+        q, k, v = qkv[0], qkv[1], qkv[2]  # make torchscript happy (cannot use tensor as tuple)
+
+        # cosine attention
+        attn = (F.normalize(q, dim=-1) @ F.normalize(k, dim=-1).transpose(-2, -1))
+        logit_scale = torch.clamp(self.logit_scale, max=torch.log(torch.tensor(1. / 0.01)).cuda()).exp()
+        attn = attn * logit_scale
+
+        relative_position_bias_table = self.cpb_mlp(self.relative_coords_table).view(-1, self.num_heads)
+        relative_position_bias = relative_position_bias_table[self.relative_position_index.view(-1)].view(
+            self.window_size[0] * self.window_size[1], self.window_size[0] * self.window_size[1], -1)  # Wh*Ww,Wh*Ww,nH
+        relative_position_bias = relative_position_bias.permute(2, 0, 1).contiguous()  # nH, Wh*Ww, Wh*Ww
+        relative_position_bias = 16 * torch.sigmoid(relative_position_bias)
+        attn = attn + relative_position_bias.unsqueeze(0)
+
+        if mask is not None:
+            nW = mask.shape[0]
+            attn = attn.view(B_ // nW, nW, self.num_heads, N, N) + mask.unsqueeze(1).unsqueeze(0)
+            attn = attn.view(-1, self.num_heads, N, N)
+            attn = self.softmax(attn)
+        else:
+            attn = self.softmax(attn)
+
+        attn = self.attn_drop(attn)
+
+        x = (attn @ v).transpose(1, 2).reshape(B_, N, C)
+        x = self.proj(x)
+        x = self.proj_drop(x)
+        return x
+
+    def extra_repr(self) -> str:
+        return f'dim={self.dim}, window_size={self.window_size}, ' \
+               f'pretrained_window_size={self.pretrained_window_size}, num_heads={self.num_heads}'
+
+    def flops(self, N):
+        # calculate flops for 1 window with token length of N
+        flops = 0
+        # qkv = self.qkv(x)
+        flops += N * self.dim * 3 * self.dim
+        # attn = (q @ k.transpose(-2, -1))
+        flops += self.num_heads * N * (self.dim // self.num_heads) * N
+        #  x = (attn @ v)
+        flops += self.num_heads * N * N * (self.dim // self.num_heads)
+        # x = self.proj(x)
+        flops += N * self.dim * self.dim
+        return flops
+    
+def window_reverse(windows, window_size, H, W):
+    """
+    Args:
+        windows: (num_windows*B, window_size, window_size, C)
+        window_size (int): Window size
+        H (int): Height of image
+        W (int): Width of image
+
+    Returns:
+        x: (B, H, W, C)
+    """
+    B = int(windows.shape[0] / (H * W / window_size / window_size))
+    x = windows.view(B, H // window_size, W // window_size, window_size, window_size, -1)
+    x = x.permute(0, 1, 3, 2, 4, 5).contiguous().view(B, -1, H, W)
+    return x
+
+def cast_tuple(val, length = 1):
+    return val if isinstance(val, tuple) else ((val,) * length)
+
+# helper classes
+
+class ChanLayerNorm(nn.Module):
+    def __init__(self, dim, eps = 1e-5):
+        super().__init__()
+        self.eps = eps
+        self.g = nn.Parameter(torch.ones(1, dim, 1, 1))
+        self.b = nn.Parameter(torch.zeros(1, dim, 1, 1))
+
+    def forward(self, x):
+        var = torch.var(x, dim = 1, unbiased = False, keepdim = True)
+        mean = torch.mean(x, dim = 1, keepdim = True)
+        return (x - mean) / (var + self.eps).sqrt() * self.g + self.b
+
+class OverlappingPatchEmbed(nn.Module):
+    def __init__(self, dim_in, dim_out, stride = 2):
+        super().__init__()
+        kernel_size = stride * 2 - 1
+        padding = kernel_size // 2
+        self.conv = nn.Conv2d(dim_in, dim_out, kernel_size, stride = stride, padding = padding)
+
+    def forward(self, x):
+        return self.conv(x)
+
+class PEG(nn.Module):
+    def __init__(self, dim, kernel_size = 3):
+        super().__init__()
+        self.proj = nn.Conv2d(dim, dim, kernel_size = kernel_size, padding = kernel_size // 2, groups = dim, stride = 1)
+
+    def forward(self, x):
+        return self.proj(x) + x
+
+# feedforward
+
+class FeedForwardDSSA(nn.Module):
+    def __init__(self, dim, mult = 4, dropout = 0.):
+        super().__init__()
+        inner_dim = int(dim * mult)
+        self.net = nn.Sequential(
+            ChanLayerNorm(dim),
+            nn.Conv2d(dim, inner_dim, 1),
+            nn.GELU(),
+            nn.Dropout(dropout),
+            nn.Conv2d(inner_dim, dim, 1),
+            nn.Dropout(dropout)
+        )
+    def forward(self, x):
+        return self.net(x)
+
+# attention
+
+class DSSA(nn.Module):
+    def __init__(
+        self,
+        dim,
+        heads = 8,
+        dim_head = 32,
+        dropout = 0.,
+        window_size = 7
+    ):
+        super().__init__()
+        self.heads = heads
+        self.scale = dim_head ** -0.5
+        self.window_size = window_size
+        inner_dim = dim_head * heads
+
+        self.norm = ChanLayerNorm(dim)
+
+        self.attend = nn.Sequential(
+            nn.Softmax(dim = -1),
+            nn.Dropout(dropout)
+        )
+
+        self.to_qkv = nn.Conv1d(dim, inner_dim * 3, 1, bias = False)
+
+        # window tokens
+
+        self.window_tokens = nn.Parameter(torch.randn(dim))
+
+        # prenorm and non-linearity for window tokens
+        # then projection to queries and keys for window tokens
+
+        self.window_tokens_to_qk = nn.Sequential(
+            nn.LayerNorm(dim_head),
+            nn.GELU(),
+            Rearrange('b h n c -> b (h c) n'),
+            nn.Conv1d(inner_dim, inner_dim * 2, 1),
+            Rearrange('b (h c) n -> b h n c', h = heads),
+        )
+
+        # window attention
+
+        self.window_attend = nn.Sequential(
+            nn.Softmax(dim = -1),
+            nn.Dropout(dropout)
+        )
+
+        self.to_out = nn.Sequential(
+            nn.Conv2d(inner_dim, dim, 1),
+            nn.Dropout(dropout)
+        )
+
+    def forward(self, x):
+        """
+        einstein notation
+
+        b - batch
+        c - channels
+        w1 - window size (height)
+        w2 - also window size (width)
+        i - sequence dimension (source)
+        j - sequence dimension (target dimension to be reduced)
+        h - heads
+        x - height of feature map divided by window size
+        y - width of feature map divided by window size
+        """
+
+        batch, height, width, heads, wsz = x.shape[0], *x.shape[-2:], self.heads, self.window_size
+        assert (height % wsz) == 0 and (width % wsz) == 0, f'height {height} and width {width} must be divisible by window size {wsz}'
+        num_windows = (height // wsz) * (width // wsz)
+
+        x = self.norm(x)
+
+        # fold in windows for "depthwise" attention - not sure why it is named depthwise when it is just "windowed" attention
+
+        x = rearrange(x, 'b c (h w1) (w w2) -> (b h w) c (w1 w2)', w1 = wsz, w2 = wsz)
+
+        # add windowing tokens
+
+        w = repeat(self.window_tokens, 'c -> b c 1', b = x.shape[0])
+        x = torch.cat((w, x), dim = -1)
+
+        # project for queries, keys, value
+
+        q, k, v = self.to_qkv(x).chunk(3, dim = 1)
+
+        # split out heads
+
+        q, k, v = map(lambda t: rearrange(t, 'b (h d) ... -> b h (...) d', h = heads), (q, k, v))
+
+        # scale
+
+        q = q * self.scale
+
+        # similarity
+
+        dots = einsum('b h i d, b h j d -> b h i j', q, k)
+
+        # attention
+
+        attn = self.attend(dots)
+
+        # aggregate values
+
+        out = torch.matmul(attn, v)
+
+        # split out windowed tokens
+
+        window_tokens, windowed_fmaps = out[:, :, 0], out[:, :, 1:]
+
+        # early return if there is only 1 window
+
+        if num_windows == 1:
+            fmap = rearrange(windowed_fmaps, '(b x y) h (w1 w2) d -> b (h d) (x w1) (y w2)', x = height // wsz, y = width // wsz, w1 = wsz, w2 = wsz)
+            return self.to_out(fmap)
+
+        # carry out the pointwise attention, the main novelty in the paper
+
+        window_tokens = rearrange(window_tokens, '(b x y) h d -> b h (x y) d', x = height // wsz, y = width // wsz)
+        windowed_fmaps = rearrange(windowed_fmaps, '(b x y) h n d -> b h (x y) n d', x = height // wsz, y = width // wsz)
+
+        # windowed queries and keys (preceded by prenorm activation)
+
+        w_q, w_k = self.window_tokens_to_qk(window_tokens).chunk(2, dim = -1)
+
+        # scale
+
+        w_q = w_q * self.scale
+
+        # similarities
+
+        w_dots = einsum('b h i d, b h j d -> b h i j', w_q, w_k)
+
+        w_attn = self.window_attend(w_dots)
+
+        # aggregate the feature maps from the "depthwise" attention step (the most interesting part of the paper, one i haven't seen before)
+
+        aggregated_windowed_fmap = einsum('b h i j, b h j w d -> b h i w d', w_attn, windowed_fmaps)
+
+        # fold back the windows and then combine heads for aggregation
+
+        fmap = rearrange(aggregated_windowed_fmap, 'b h (x y) (w1 w2) d -> b (h d) (x w1) (y w2)', x = height // wsz, y = width // wsz, w1 = wsz, w2 = wsz)
+        return self.to_out(fmap)
 
 class PoolFormerBlock(nn.Module):
     """
@@ -731,7 +1091,15 @@ class PoolFormerBlock(nn.Module):
 
         self.norm1 = norm_layer(dim)
         #self.token_mixer = Pooling(pool_size=pool_size)
-        self.token_mixer = FNetBlock()
+        # self.token_mixer = FNetBlock()
+        self.window_size = 4
+        self.attn_heads = 4
+        self.attn_mask = None
+        # self.token_mixer = WindowAttention(dim=dim, window_size=to_2tuple(self.window_size), num_heads=4)
+        self.token_mixer = nn.ModuleList([
+            DSSA(dim, heads=self.attn_heads, window_size=self.window_size),
+            FeedForwardDSSA(dim)
+        ])
         self.norm2 = norm_layer(dim)
         mlp_hidden_dim = int(dim * mlp_ratio)
         self.mlp = Mlp(in_features=dim, hidden_features=mlp_hidden_dim, 
@@ -748,16 +1116,26 @@ class PoolFormerBlock(nn.Module):
                 layer_scale_init_value * torch.ones((dim)), requires_grad=True)
 
     def forward(self, x):
+        B, C, H, W = x.shape
+        # x_windows = window_partition(x, self.window_size)
+        # x_windows = x_windows.view(-1, self.window_size * self.window_size, C)
+        # attn_windows = self.token_mixer(x_windows, mask=self.attn_mask)
+        # attn_windows = attn_windows.view(-1, self.window_size, self.window_size, C)
+        # x_attn = window_reverse(attn_windows, self.window_size, H, W)
+        x_attn = self.token_mixer(x)
         if self.use_layer_scale:
             x = x + self.drop_path(
                 self.layer_scale_1.unsqueeze(-1).unsqueeze(-1)
-                * self.token_mixer(self.norm1(x)))
+                * x_attn)
             x = x + self.drop_path(
                 self.layer_scale_2.unsqueeze(-1).unsqueeze(-1)
                 * self.mlp(self.norm2(x)))
         else:
-            x = x + self.drop_path(self.token_mixer(self.norm1(x)))
+            x = x + self.drop_path(x_attn)
             x = x + self.drop_path(self.mlp(self.norm2(x)))
+
+        if np.count_nonzero(np.isnan(x)) > 0:
+            print("PFBlock")
         return x
 class PatchEmbed(nn.Module):
     """
@@ -843,7 +1221,7 @@ class LayerNormChannel(nn.Module):
             + self.bias.unsqueeze(-1).unsqueeze(-1)
         return x
 
-class FeedForward(nn.Module):
+class FeedForwardFNet(nn.Module):
     def __init__(self, dim, hidden_dim, dropout = 0.):
         super().__init__()
         self.net = nn.Sequential(
@@ -879,7 +1257,7 @@ class FNet(nn.Module):
         for _ in range(depth):
             self.layers.append(nn.ModuleList([
                 PreNorm(dim, FNetBlock()),
-                PreNorm(dim, FeedForward(dim, mlp_dim, dropout = dropout))
+                PreNorm(dim, FeedForwardFNet(dim, mlp_dim, dropout = dropout))
             ]))
     def forward(self, x):
         for attn, ff in self.layers:

requirements.txt

@@ -2,3 +2,5 @@ torch==1.12.1+cu116
 ordered-set==4.1.0
 numpy==1.21.5
 einops==0.4.1
+pandas
+timm==0.9.16